Commit a781f5ae authored by Olesya's avatar Olesya 🐋
Browse files

string concat fix

parent ce253f16
......@@ -17,7 +17,7 @@ DEedgeR <- function(cts, annotation) {
# Top genes
top <- topTags(et)
top_subset <- rownames(top)
loginfo('Leave top ', length(top_subset), ' genes')
loginfo(paste0('Leave top ', length(top_subset), ' genes'))
# Leave only top genes
data <- t(cpm(y)[top_subset,])
......@@ -25,7 +25,7 @@ DEedgeR <- function(cts, annotation) {
# Score result
res <- Hobotnica(dist_matrix, annotation)
loginfo('Hobotnica score of edgeR is ', res)
loginfo(paste0('Hobotnica score of edgeR is ', res))
return(res)
}
......@@ -47,9 +47,9 @@ if (out == "") {
}
loginfo('Run 5 differential analysis tools and score with Hobotnica')
loginfo('Count matrix is in ', count)
loginfo('Coldata is in ', cols)
loginfo('Output will be written in ', out)
loginfo(paste0('Count matrix is in ', count))
loginfo(paste0('Coldata is in ', cols))
loginfo(paste0('Output will be written in ', out))
# Load coldata
load('/shared/pasilla.coldata')
......
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