Commit f4bf0803 authored by mirachirkova's avatar mirachirkova
Browse files

fix bugs

parent fe9c4b38
......@@ -3,7 +3,7 @@ Comparing differential expression analysis tools with Hobotnica
---------------------------------------------------------------------------------------
Version: 1.0
Version: 1.2
------------
General usage notes
......@@ -97,7 +97,9 @@ Create an image **diffexprimage** and start container **de_container**
(it automatically uses Dockerfile from repository):
> **$ docker build -t diffexprimage .**
>
> **$ docker run --name de_container diffexprimage echo "hello from docker"**
> **$ docker run -it --name de_container diffexprimage /bin/bash"**
>
>**# exit**
>
Copy your input data to container. **countmatrix.txt** is matrix of
un-normalized counts file name and **annotation.txt** is table of
......@@ -117,6 +119,11 @@ Start work with program from Docker container.
>
where **output** is a name of directory for results.
Copy output to your computer.
>**docker cp de_container:output computer_output**
>
where **computer_output** is a directory for results.
-------------------------------------
Source files description
......
install.packages(c('knitr', 'tidyverse', 'hexbin', 'doParallel', 'ggplot2', 'ggbeeswarm', 'ggrepel', 'import', 'logging', 'amap',
'grid', 'futile.logger'), dependencies = TRUE)
'grid', 'futile.logger', 'labeling'), dependencies = TRUE)
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
......
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